rs215015601 SNP Detail

Summary

• ID
  rs215015601
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11888879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGATTGT GTAACGGATA
  TGTGGTTGGT TGTCTTCTGG GGCTTAGGGC TTACTGTCAA CAGGTAGCAC ACTAGTGACC
  ACGGAAAGGC GAGCTTCTCT GACTAGAAGA GGGGTCTCAT TCACCACTGA CCCAGTGTCC
  GCCTGGGAAG TGAAGGCAGA AAGAGGGTGC ACAGGTCACA GAAACCCCAC TGGAACACTC
  W
  CCGCTGCCAA CGATAGTGTT TGTGTAAAAA ATATAAACGT GTGTTCGAAA CCATGGTGCA
  AGATAGAATA TTTGTCTAGA GATCAGTTTT CAATAGGCCA GGAGCAAGAT AGTCGATTTT
  TATTAATAAC GAAAAGTATT AAATAGAAAT AAAGTGAAAG ATGAAGACCT TTAGATCGGA
  GGGTGTTGAA GCCATGGCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494090	CHEV_8_11838879	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215015601					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11888879 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	83 bp downstream
Tex29	testis expressed 29	1609 bp upstream
Tssr76253	transcription start site region 76253	1622 bp upstream
Tssr76254	transcription start site region 76254	1635 bp upstream
Tssr76255	transcription start site region 76255	1689 bp upstream