rs215016668 SNP Detail

Summary

• ID
  rs215016668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65518852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCCAATT CTTTGATGGA AGAAATCTAA
  AAAAATACGT CAAGGTTATA CATGTCAGAG CTTACGTTCC TGATTTCATA TTGAAaagca
  tagatatgat aagtgtcttt cccaaggtca cacagctttt taatggaagc acctgggttT
  Y
  CTGAATATGG TTATTGATAT ATTCAAATGA TACGCATTCA TCTGTCTTAT CCTAGCCTCT
  GAAGGTAAAA GACAGAAGAG AGAAAGACTT gcattgcata aagcaaaccc accctggtgg
  tgcaagtcta cagtccacct acttgggagc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325657200	CHEV_18_65545435	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215016668					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65518852 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			465 bp distal
Rr539524	regulatory region 539524			581 bp proximal
Tssr151600	transcription start site region 151600			244 bp upstream
Tssr151601	transcription start site region 151601			274 bp upstream