rs215024207 SNP Detail

Summary

• ID
  rs215024207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43520302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAATCA CAGAATCAAG
  TTCTGTGACA TCACCAGCTG CTAGGCAGAC TTCCCAGCCA GGGACTTCAG GGGCCAGCCA
  GGCCTGTAAG GAATCGTGGC TATAGCAAAG GGCTCCCTGC CAAGGTGACA GTGGAGTGGG
  GGAAGGGATA GCAAGTGATG ATGATACTCA GACTCTGAAT ATGGAAAGAG CTTTTGGAGA
  Y
  GGTCCATAGA GACCCAGGCT AGCCTGGGAA ACAGACGCAG GGAGGAGCAG GATTGCCCAT
  AAAGGAAAAT GACAACAGCA GTGTGGTTTT TAAGTGCACT GGCTCAGAGT CAGACTGTCT
  GTCTTCTTAG AGCCATGGCT CGGCTACTCC ATGCTTGTTA TATGACCTTG GGCAACACTT
  TTTGGCCTCC CGAAGCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361322342	MGP_WTSI_4_43533174	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215024207					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361322342	MGP_WTSI_4_43533174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43520302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398232	regulatory region 398232			within coordinates
Rr591018	regulatory region 591018			1280 bp proximal
Tpm2	tropomyosin 2, beta			Intron
				Noncoding-Transcript-Variant
Tssr36976	transcription start site region 36976			1861 bp downstream
Tssr36977	transcription start site region 36977			1045 bp downstream
Tssr36978	transcription start site region 36978			828 bp downstream
Tssr41432	transcription start site region 41432			1847 bp upstream
Tssr41433	transcription start site region 41433			1829 bp upstream
Tssr41434	transcription start site region 41434			1598 bp upstream
Tssr41435	transcription start site region 41435			1003 bp upstream
Tssr41436	transcription start site region 41436			584 bp upstream
Tssr41437	transcription start site region 41437			243 bp upstream