rs215028777 SNP Detail

Summary

• ID
  rs215028777
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41496218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCCTTT CTTCTTTAAG
  GAGGCATGCT AGAGAAACAG TAACTCATTT TAAAATCTGG CACCTGGAAT GAAATTTATG
  GGCAAAAACA CCTTTATACA AAAAGTTTAT GGCTTCCCAC AGAACGCAGT GAGATTAGAA
  TTGAGCGACT GTAACAAAGG GTGATTTGGT GATTTTGTAG GGTTTTTCTG TTTTTTTTTT
  C
  TTTTTTTTTT TTTCTGGAGG GGAAAACAGA TGATTTAGAA AGTGTTAGGA ACATATCAAG
  CCCCAGGGAA AGAAAAACGT TTGATTGGTA TTAATTAAAA CACTGCTAAT ATATTCTAAT
  AAAATCAGAT TTAACATTCT AAACTAATCC GCCTAGCATG TCAAAGGCAA AGAAAAGTAT
  TATCTATCTT ATTTGCATCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ
ss377342663	MGP_WTSI_9_41393005	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ
rs215028777					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377342663	MGP_WTSI_9_41393005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41496218 () rs orientation: forward

Symbol	Name	Function Class
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677068	regulatory region 677068	363 bp distal
Rr677069	regulatory region 677069	within coordinates
Tssr84528	transcription start site region 84528	1880 bp downstream
Tssr84529	transcription start site region 84529	507 bp downstream
Tssr84530	transcription start site region 84530	469 bp upstream
Tssr84531	transcription start site region 84531	1563 bp upstream