rs215032279 SNP Detail

Summary

• ID
  rs215032279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123059513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    taaaaacat tctctaaatt gccttggtca
  tggtgtctta tcTAaggagg tggaggagga agaagaggag gtggaggagg aaaaggaggg
  ggaagaggaa gaggaagagg aagaggaaga ggaagaggaa gaggaggagg aggaggagga
  R
  gaagaagaag aagaagaaga agaagaagaa gaagaagaag aagaagaaga agaagaagaa
  gaagaagaag aagaagaaAG TTGCGTGGCC TAGATCACTC ACCAGGGTCA GGAATGGGGG
  CTGTGGCTTG CTTGGGGACC CTCTATGTCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320918496	CHEV_3_122968782	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215032279					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123059513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	1081 bp proximal
Gm56815	predicted gene, 56815	within coordinates
Gm66521	predicted gene, 66521	within coordinates
Rr77168	regulatory region 77168	887 bp proximal
Sec24d	SEC24 homolog D, COPII coat complex component	1591 bp upstream
Tssr31540	transcription start site region 31540	1077 bp downstream
Tssr31541	transcription start site region 31541	1046 bp downstream
Tssr31542	transcription start site region 31542	1317 bp upstream
Tssr31543	transcription start site region 31543	1344 bp upstream
Tssr31544	transcription start site region 31544	1581 bp upstream