rs215034096 SNP Detail

Summary

• ID
  rs215034096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATGACTGG AGGCCAGGGC AGGGGTTGGG
  GGGGGAGTCG AGAATTATAG CACAGCACAG AAGCAACCAC CTCCTCCCAG AGACACATGG
  GGACTCATTA GGGATGGAGA GAGCCACAGT TGGCAAAGCC AGCCCTCCAC TTAGGGGCTT
  Y
  TGTAGGGAGG AGAGACAGGA TGTGATAAGA CAGTTAAAAG TAGCTCTGTA GGGCCCAGTG
  ACTTGACGTA CACCTCTAGA CTCTGTTAGA CAGGAGCATC ACTTAAATCT AGCTTAGCCA
  AGCCAGGCAA CACGGGAAAA GCATAAAAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325404823	CHEV_17_46863810	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215034096					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9242	CpG island 9242	1842 bp proximal
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1318 bp downstream
Rr331605	regulatory region 331605	987 bp distal
Rr331606	regulatory region 331606	614 bp proximal
Rr331607	regulatory region 331607	1214 bp proximal
Rr339923	regulatory region 339923	1413 bp proximal
Tssr148377	transcription start site region 148377	538 bp upstream
Tssr148378	transcription start site region 148378	519 bp upstream
Tssr148379	transcription start site region 148379	506 bp upstream
Tssr148380	transcription start site region 148380	143 bp upstream
Tssr148381	transcription start site region 148381	495 bp downstream