rs215036359 SNP Detail

Summary

• ID
  rs215036359
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6138271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTTGAA TGTATTTTCA
  TTGAAAATGA ACTGCATCTA TAAAGATGCC GAAATGTCTA GCGGCTTTAG AACAAGCTGA
  ATTCTCAACT GTTAAATAAT AATAAATAAA TCTCACCGAA ATGTTGAGAA AATTTCTAAC
  AGCTGTAGCT TACAGTCCTT ATTAAATCTA ATGGGAACAA TATTCTAAGA AATTCTCCTC
  K
  TAGATGCTCA AAATGAGAAT TAAATGTACT TGTGCTTTCT CACTGGTTTT AAACAAGAAG
  CCAACATACT TGCCTCATTT CTAACCAAAA AGCATTAATG TCTGTGTAGC ATCGTTTCGG
  GATTAGAGTG AAACAGGAAC TGGCAGAATT AAAATTACAA ACACATGTGA ACTCGGAAAG
  ACATATTTCT TTCTTTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325520329	CHEV_18_6138269	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215036359					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6138271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9676	CpG island 9676	1456 bp distal
Gm58680	predicted gene, 58680	713 bp downstream
Rr533478	regulatory region 533478	1090 bp distal
Rr533479	regulatory region 533479	204 bp distal
Rr533480	regulatory region 533480	1838 bp proximal
Tssr149959	transcription start site region 149959	1844 bp downstream