rs215040419 SNP Detail

Summary

• ID
  rs215040419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107149291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGGCTG AACGAGTCTC
  CTTCCTCTTA GCTGCCGGTG CTTGAAAGAA AAGCTAGCTT AATGAACTGG GCGTGACAGC
  CGGTGGTGAC TGGCACTCAC AGAAGAGACC CTGGGAGCTT ACGGAAGGGC TGACATTGCT
  CCATTCTTCA GAAACTCAAT TAAGCAAGCA TTCACTGTGA CCCTCCCCTG TGACAAGACC
  R
  GGAGCTGCTG GGCACAGGAT CAAATGCACC AAGAAAAAGC CCTCTTGGCA CAGTCAGGGT
  GGCTTTGTGG CAGATGCAGA GTGAAAGGTG ACAGGGGAAC TAAACTGGCA TCACCTCAAG
  GATTCAAAGG CAAAAAGATG AAGATGGAGG TGAAGTAAGT TGAGAAGCAA GTTTGGGAAC
  GTGTGGGAAA TGACGATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864905	CHEV_3_107044893	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215040419					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107149291 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	within coordinates
Rr582947	regulatory region 582947	99 bp distal
Rr582948	regulatory region 582948	within coordinates
Tssr31192	transcription start site region 31192	176 bp downstream
Tssr31193	transcription start site region 31193	95 bp downstream
Tssr31194	transcription start site region 31194	57 bp downstream