rs215042553 SNP Detail

Summary

• ID
  rs215042553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTCTG CCCGGCGCCC
  ACAGGGCAGG GCCCCCCGAG GTGGGAAAGG GGGATCCTGG CTCCCGCGGT GCGCGGTCCG
  GGTGGGGGGG GTTCGGGGGG CGCTCGGAGG TGGCCACGTG CTCCACCATT GTCGCAGACC
  TTTAGGACAG ATGGTTCCTT GAGCCTTGGG CGGGCTGTGC CAGGCTTGGC ACAGACCACC
  Y
  ATACTGCAGC ACTGCTGCCA CGAGCCTGCC GCGTGGCTTC AGGTGATAGG TCTGGGTCAC
  CAAGTCCAGA CCCACTGCGG ACTGGATAAA AGCCGGAAAG CGAGTGCTTA GCCCCCCTCC
  TTTTTTTTTC TAATAGCAAC CATGTCTAAG GGACCTGCAG TTGGCATTGA TCTCGGCACC
  ACCTACTCCT GTGTGGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377322600	MGP_WTSI_9_40609864	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215042553					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377322600	MGP_WTSI_9_40609864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	1625 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	953 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	232 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1802 bp upstream
Tssr84480	transcription start site region 84480	1675 bp downstream
Tssr84481	transcription start site region 84481	497 bp downstream
Tssr84482	transcription start site region 84482	124 bp upstream
Tssr84483	transcription start site region 84483	585 bp upstream
Tssr84484	transcription start site region 84484	844 bp upstream
Tssr88972	transcription start site region 88972	995 bp upstream