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rs215054541 SNP Detail
Summary
  • ID
    rs215054541
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:93350063 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAATATTGTT TTAAAACATG
ACAGGGCTAC ATTCATTTTT GAGCCCGAGT TATTTAAATC TGTATTGTAA TATGAGTATT
AAAGAAGTTA ATAGCATATA TTTAATGGTC TTGATGGCAT TGTTAGTAGG AATGAAGTGT
AAGTTAATAG GGCATTACCA CTGATGATGC CTGATCAAGT TAGTTGGACC TGAAAAGACT
M
CCCGCACCAT CTTCCAACTT TCAGCAACAG AAATTTGCCT GTTTCGCAAT TAAAATGGCA
TTGCTGTAAA TATCTCAGTT CTTCTTCAAA CATGGAATAA GACTTAAATC AGGAGCACTG
GCTATTTCAA GCAGAAATAT CTGTTGAAAA TCTTCTTAAA TTCCATTGTA CTGATCACAA
GGATGAAACC ATTCTTATTC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876285 MGP_WTSI_3_93246678 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215054541 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876285 MGP_WTSI_3_93246678 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93350063 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 769 bp proximal
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 318 bp downstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 671 bp upstream
Tssr961 transcription start site region 961 1247 bp upstream
Tssr30344 transcription start site region 30344 1992 bp downstream
Tssr30345 transcription start site region 30345 367 bp downstream
Tssr30346 transcription start site region 30346 342 bp downstream
Tssr30347 transcription start site region 30347 695 bp upstream
Tssr30348 transcription start site region 30348 734 bp upstream
Tssr30349 transcription start site region 30349 740 bp upstream
Tssr30350 transcription start site region 30350 782 bp upstream
Tssr30351 transcription start site region 30351 813 bp upstream
Tssr30352 transcription start site region 30352 862 bp upstream
Tssr30353 transcription start site region 30353 874 bp upstream
Tssr30354 transcription start site region 30354 892 bp upstream
Tssr30355 transcription start site region 30355 911 bp upstream
Tssr30356 transcription start site region 30356 924 bp upstream
Tssr30357 transcription start site region 30357 1022 bp upstream
Tssr30358 transcription start site region 30358 1137 bp upstream
Tssr30359 transcription start site region 30359 1166 bp upstream
Tssr30360 transcription start site region 30360 1196 bp upstream
Tssr30361 transcription start site region 30361 1521 bp upstream
Tssr30362 transcription start site region 30362 1535 bp upstream
Tssr30363 transcription start site region 30363 1678 bp upstream
Tssr30364 transcription start site region 30364 1749 bp upstream
Tssr30365 transcription start site region 30365 1784 bp upstream
Tssr30366 transcription start site region 30366 1836 bp upstream
Tssr30367 transcription start site region 30367 1880 bp upstream
Tssr30368 transcription start site region 30368 1897 bp upstream
Tssr30369 transcription start site region 30369 1910 bp upstream
Tssr30370 transcription start site region 30370 1917 bp upstream
Tssr30371 transcription start site region 30371 1937 bp upstream
Tssr30372 transcription start site region 30372 1950 bp upstream
Tssr34352 transcription start site region 34352 1108 bp downstream
Tssr34353 transcription start site region 34353 1129 bp downstream
Tssr34354 transcription start site region 34354 1139 bp downstream
Tssr34355 transcription start site region 34355 1277 bp downstream
Tssr34356 transcription start site region 34356 1949 bp downstream
Tssr34357 transcription start site region 34357 1994 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory