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rs215064816 SNP Detail
Summary
  • ID
    rs215064816
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:72537683 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTATTACGTA TTTTCCTCAA
TGACATTTCC AATGCTATCC CAAAAGTCCC CCATACCCTC CCCCCCCCCA CTTCCCTACC
CACCCATTCT CATTTTTTTG ACCCTGGCGT TCCCCTGTAC TGGGGCATAT AAAGTTTGTG
TGTGTGTGAT GGGCCTCTCT TTCCAGTGAT GGCCGACTAG GGCATCTTTT GATACATATG
Y
AGCTAAAGTC AAGAGCTCCG GGGTACTGGT TAGTTCATAA TGTTGTTGCA CCTACAGGGT
TGCAGATCTC TTTAGCTCCT TAGATACTTT CTCTAGCTCG GCACTGTCTT TCCTACACAG
ATATCATGTC AGAATCAAAG TTTGCTTTGT TTTACAGCAT CATTCTACCA AACACAGCCT
CCACCCCACC CATCCCAACT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403771579 MGP_WTSI_X_70739416 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C T C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215064816 SNP C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C T C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403771579 MGP_WTSI_X_70739416 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:72537683 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Bgn biglycan within coordinates
Rr4565 regulatory region 4565 83 bp distal
Rr6090 regulatory region 6090 683 bp distal
Rr7747 regulatory region 7747 890 bp proximal
Rr10758 regulatory region 10758 156 bp distal
Tssr5633 transcription start site region 5633 800 bp downstream
Tssr5634 transcription start site region 5634 620 bp downstream
Tssr5635 transcription start site region 5635 975 bp downstream
Tssr161219 transcription start site region 161219 1942 bp downstream
Tssr161220 transcription start site region 161220 1339 bp downstream
Tssr161221 transcription start site region 161221 1280 bp downstream
Tssr161222 transcription start site region 161222 1265 bp downstream
Tssr161223 transcription start site region 161223 1095 bp downstream
Tssr161224 transcription start site region 161224 1041 bp downstream
Tssr161225 transcription start site region 161225 863 bp downstream
Tssr161226 transcription start site region 161226 812 bp downstream
Tssr161227 transcription start site region 161227 762 bp downstream
Tssr161228 transcription start site region 161228 521 bp upstream
Tssr161229 transcription start site region 161229 554 bp upstream
Tssr161230 transcription start site region 161230 578 bp upstream
Tssr161231 transcription start site region 161231 595 bp upstream
Tssr161232 transcription start site region 161232 646 bp upstream
Tssr161233 transcription start site region 161233 718 bp upstream
Tssr161234 transcription start site region 161234 738 bp upstream
Tssr161235 transcription start site region 161235 803 bp upstream
Tssr161236 transcription start site region 161236 846 bp upstream
Tssr161237 transcription start site region 161237 900 bp upstream
Tssr161238 transcription start site region 161238 936 bp upstream
Tssr161239 transcription start site region 161239 985 bp upstream
Tssr161240 transcription start site region 161240 999 bp upstream
Tssr161241 transcription start site region 161241 1035 bp upstream
Tssr161242 transcription start site region 161242 1068 bp upstream
Tssr161243 transcription start site region 161243 1232 bp upstream
Tssr161244 transcription start site region 161244 1256 bp upstream
Tssr161245 transcription start site region 161245 1351 bp upstream
Tssr161246 transcription start site region 161246 1507 bp upstream
Tssr161247 transcription start site region 161247 1530 bp upstream
Tssr161248 transcription start site region 161248 1799 bp upstream
Tssr163546 transcription start site region 163546 1950 bp upstream
Tssr163547 transcription start site region 163547 541 bp downstream
Tssr163548 transcription start site region 163548 647 bp downstream
Tssr163549 transcription start site region 163549 724 bp downstream
Tssr163550 transcription start site region 163550 779 bp downstream
Tssr163551 transcription start site region 163551 864 bp downstream
Tssr163552 transcription start site region 163552 990 bp downstream
Tssr163553 transcription start site region 163553 1076 bp downstream
Tssr163554 transcription start site region 163554 1095 bp downstream
Tssr163555 transcription start site region 163555 1122 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory