rs215074419 SNP Detail

Summary

• ID
  rs215074419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70403024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAGCCCA GGCAGGGGTT GGGCTGCCCT TCCCCCAGCT
  TCCCTTCCCT ATATAATCCA GCCATTTTGG TTACCTGCCC CCCCCCCTTT TTGGTCTACC
  Y
  TTTACCCTCC TGGTCTCTTA GTCTGGCTCT CCCCTCCCCA CCCTTTTCTC ATAGCCTGGC
  TCAGGGTCAT GTTCACTCTG GACTTTCCCA GATGTCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735916	CHEV_11_70325700	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215074419					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70403024 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	1928 bp upstream
Rr235912	regulatory region 235912	1624 bp distal
Rr235913	regulatory region 235913	1377 bp proximal
Rr247104	regulatory region 247104	1823 bp distal
Rr251336	regulatory region 251336	within coordinates
Tm4sf5	transmembrane 4 superfamily member 5	1015 bp downstream
Tssr102719	transcription start site region 102719	1999 bp downstream
Tssr102720	transcription start site region 102720	1943 bp downstream
Tssr102721	transcription start site region 102721	1349 bp downstream
Tssr102722	transcription start site region 102722	1123 bp downstream
Tssr102723	transcription start site region 102723	1097 bp downstream
Tssr108976	transcription start site region 108976	1016 bp upstream
Vmo1	vitelline membrane outer layer 1 homolog (chicken)	1318 bp downstream