rs215088005 SNP Detail

Summary

• ID
  rs215088005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57873888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTCCG AGATAGTAAG
  GACCCGACAC AAACTCCACC TACTACCTTC GTCTTTTCTT AATCTTTCGG TAGAGGGTCT
  TTATTTTGAC AGTGTGAAAT ACATGAGAAG TGGGCTTCGG TTCGAAATAC ACCACCAGCC
  CTGAGATCTG ACTTGGCAGA CTGCGGTGGT CATGAGTGAG AACCGGGGAA GCCTCACGCC
  Y
  GGGAATGGCA GGGAGGATCA CGAGGCACAA AGTCAAAAGG AGAGAAAAGA GGTTAAGCAT
  ACTCGGTACA CAAAGTTGCC ATTAAAGTTT ATTTCCCTTA TATCCAGATA GGTGACGCTA
  CACTTTGCCG GTTACTAAAA GCTGCAGGCT CTGCTTAGAA AATAATACCC AGGCTTCTAG
  CATGTGTTTT ATTCCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365063192	MGP_WTSI_5_58107785	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215088005					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365063192	MGP_WTSI_5_58107785	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57873888 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	161 bp distal
Cpgi15875	CpG island 15875	306 bp proximal
Gm73136	predicted gene, 73136	within coordinates
Pcdh7	protocadherin 7	1421 bp upstream
Rr611758	regulatory region 611758	1557 bp distal
Rr611759	regulatory region 611759	101 bp proximal
Rr611760	regulatory region 611760	1071 bp proximal
Rr611761	regulatory region 611761	1562 bp proximal
Tssr1483	transcription start site region 1483	1592 bp upstream
Tssr46283	transcription start site region 46283	373 bp downstream
Tssr46284	transcription start site region 46284	379 bp upstream
Tssr46285	transcription start site region 46285	681 bp upstream
Tssr46286	transcription start site region 46286	783 bp upstream
Tssr46287	transcription start site region 46287	934 bp upstream
Tssr46288	transcription start site region 46288	987 bp upstream
Tssr46289	transcription start site region 46289	1115 bp upstream
Tssr46290	transcription start site region 46290	1199 bp upstream
Tssr46291	transcription start site region 46291	1489 bp upstream
Tssr46292	transcription start site region 46292	1718 bp upstream