rs215088279 SNP Detail

Summary

• ID
  rs215088279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141173740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGCGG GCGGAGCGGG
  GGAGCTCGGT GGTGTGGCTG AGCCCGCCGA ATCGCAGGCG GCCTCTGGCT CGGCCCACCC
  ACACGCCCGC CTCCGCTCAC TAAGGACGTC ACCGCCAAAA AGGCGGAGCC CGATCGGGCT
  TGCAGCTGCT GCAAAGGAGG AGGGCTGCTT CCGAAGGGTC GCAGGTCGCC TAAAGCCTCC
  Y
  TTGAGCCCGC AGCCACCATG CCGCTCCCGC AGTGCTGGGC AAAATAGCCC ACGAGGGCTT
  AGCGCCCAGT AGTCTAGAGC CGCAGAACTG GCCCACGCCC TAGCGGGCTA CCCGGGACTC
  CACCCAGGAT GAAAGTTCCC CCGGGGTCAT CTTCCAGCTG CCCTTAGTTA GATACCTATC
  TTTGGACTGC CTCGTGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404774731	MGP_WTSI_X_138825287	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215088279					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404774731	MGP_WTSI_X_138825287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141173740 () rs orientation: forward

Symbol	Name	Function Class
Acsl4	acyl-CoA synthetase long-chain family member 4	209 bp upstream
Cpgi22977	CpG island 22977	within coordinates
Gm61820	predicted gene, 61820	within coordinates
Rr8330	regulatory region 8330	within coordinates
Tssr162237	transcription start site region 162237	13 bp downstream
Tssr164293	transcription start site region 164293	399 bp upstream
Tssr164294	transcription start site region 164294	381 bp upstream
Tssr164295	transcription start site region 164295	316 bp upstream
Tssr164296	transcription start site region 164296	298 bp upstream
Tssr164297	transcription start site region 164297	224 bp upstream
Tssr164298	transcription start site region 164298	163 bp upstream
Tssr164299	transcription start site region 164299	130 bp upstream