rs215103399 SNP Detail

Summary

• ID
  rs215103399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114269257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAA AAGCCTGCGT GGGAGCGCAG
  R
  CGGGTGCAGC GGGTCCCCTG CTCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321651942	CHEV_5_114581205	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215103399					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114269257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73235	predicted gene, 73235	1489 bp downstream
Gm73237	predicted gene, 73237	482 bp upstream
Rr617829	regulatory region 617829	800 bp distal
Rr617830	regulatory region 617830	260 bp distal
Rr617831	regulatory region 617831	307 bp proximal
Tssr48056	transcription start site region 48056	820 bp downstream
Tssr48057	transcription start site region 48057	752 bp downstream
Tssr48058	transcription start site region 48058	18 bp downstream
Tssr48059	transcription start site region 48059	within coordinates
Tssr48060	transcription start site region 48060	1014 bp upstream
Tssr52695	transcription start site region 52695	470 bp upstream
Tssr52696	transcription start site region 52696	390 bp downstream
Ung	uracil DNA glycosylase	within coordinates