rs215103917 SNP Detail

Summary

• ID
  rs215103917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141390941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGCCAT CCTGGAGTTA
  GGACGACTTG GGGATTCCGT GGGTCCCCAA GCAATGTCGC AGGGCACAGC TGGGGTGACC
  AGCAGGTGCT GGTTCTCGGC CTTTGCCCCG AGGGAGGGAG GGAAGATGCA GTGGATTCCT
  CGAGGATGCT CTCCCTGCCC CGTCCTACCC GCAGCCTTCC CGAGGTGTCA CGGGCCAGTC
  K
  CGGGAAGACA AGGCCGATTC GGGCACCGGG GAGCTCCGAG GACGCTGACC TCAACTTTGT
  TCTTTAAAAA TAGCTCGGAG GCCGCGGCGC TCCCGGGAGT CGCCTGCTTC TCCAGCAGGG
  CCCAGGGTCG CCAGGACGAC AGTGGCCCGG GGTCCCGGTC ATGGAGGCGA CCCGGGGGGG
  ACTAGCGACG GGGACCGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388837	CHEV_4_141219545	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215103917					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141390941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	within coordinates
Gm54266	predicted gene, 54266	465 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603850	regulatory region 603850	within coordinates
Rr603851	regulatory region 603851	478 bp proximal
Rr603852	regulatory region 603852	578 bp proximal
Rr603853	regulatory region 603853	1259 bp proximal
Tssr40091	transcription start site region 40091	557 bp upstream
Tssr40092	transcription start site region 40092	611 bp upstream
Tssr44355	transcription start site region 44355	369 bp downstream
Tssr44356	transcription start site region 44356	433 bp downstream