rs215108349 SNP Detail

Summary

• ID
  rs215108349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:120879800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CACCCACTTG TGGAAGACCC
  Y
  GAGCAGGATA TGCATCTGCG GGTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870961	CHEV_11_120850288	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215108349					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120879800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	1167 bp proximal
Csnk1d	casein kinase 1, delta	Intron
Rr461861	regulatory region 461861	1159 bp distal
Rr461862	regulatory region 461862	82 bp distal
Rr461863	regulatory region 461863	57 bp proximal
Rr461864	regulatory region 461864	516 bp proximal
Rr461865	regulatory region 461865	1933 bp proximal
Tssr106388	transcription start site region 106388	1584 bp upstream