rs215123596 SNP Detail

Summary

• ID
  rs215123596
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77353916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCAGGAGG CTGGAGGAGG GGGCGAGTAG
  GCCGGCCTTC AGGCCTGGGG CTACAGAAGT GGTTTGAAGG GCACAAGGAT GCCCGGGCAG
  GGGAGGGGCA GGAAGCAGTT GGCCTTTGGG AGAACCTGCT GTGTCCCCTT GGGAAAAGTA
  K
  CAAGCATTGC TAAGCTCCTA GCTCCAGAAG CCGAAGTCGT AGAACCAGAA AGAGGACCTC
  ACCTCCTCCC TGGTTGCACA TCTGGTCCTT GCAGGTGGGG TCGAGGGCCC CCACCCTCAA
  GAGAACGGAC TAGCCAGCCC AGGCATCGCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755235	CHEV_11_77276592	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215123596					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77353916 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	within coordinates
Cpgi3305	CpG island 3305	within coordinates
Rr247229	regulatory region 247229	within coordinates
Tssr103136	transcription start site region 103136	669 bp downstream
Tssr103137	transcription start site region 103137	652 bp downstream
Tssr103138	transcription start site region 103138	525 bp downstream
Tssr103139	transcription start site region 103139	494 bp downstream
Tssr103140	transcription start site region 103140	438 bp downstream