rs215124747 SNP Detail

Summary

• ID
  rs215124747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87019291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTATAG TGGCTGCAGA TTTTCAGGCT
  CACATAATTA GTTGATTACA TCAGGACAGA AATTCAGATT CTGAATTAGT TTGCCTCTAA
  TCACGATATC TTTACAAATG TTTGTTTATT TAGtgtgtgc atgggtgtgc attgatgtgc
  Y
  ggcgtggagg tcaggacaac ttggagttgc ttctcctttt accatgtggg attcctggga
  tagaagtcag gtcttcaggt ttggtggtag gagcctttgg caatgctgag ccaccttgcc
  cgttccAGTA TATCTTCTTA AAAATTTGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772710	CHEV_11_86941967	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215124747					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87019291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3484	CpG island 3484	577 bp distal
Gm11491	predicted gene 11491	1437 bp upstream
Rr453749	regulatory region 453749	1571 bp distal
Rr453750	regulatory region 453750	1378 bp distal
Rr453751	regulatory region 453751	356 bp distal
Trim37	tripartite motif-containing 37	within coordinates
Tssr103911	transcription start site region 103911	1414 bp downstream
Tssr103912	transcription start site region 103912	1360 bp downstream
Tssr103913	transcription start site region 103913	1332 bp downstream
Tssr103914	transcription start site region 103914	1294 bp downstream
Tssr103915	transcription start site region 103915	1201 bp downstream
Tssr103916	transcription start site region 103916	1186 bp downstream