rs215134316 SNP Detail

Summary

• ID
  rs215134316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTACAAA TGATTGTAAG
  CCACTGTGTA GTTGCTGGGA ATTGAACTTA GGACCTTTGG AAGAGGTTAT TGCAGAGAAT
  CTGCGTTGAG GTTCTAGCAA GGGGAAGGGG TTGGTTGGTG GCTTACAGCT ACTCACAACT
  CTAGTTGTGT TCCTAACCGC TGAGCCATCT CTCCAGTACC AGCATAGGAG TCTTCATAAT
  Y
  AGCTCCTGGC CCTGCTTAGA GATCTATCCT TTCTTTTGAT AATGCCATTT AACCACCAAA
  TTCTTTCTTT AAATGTACTA GTCTTGCTCT CATTCACCTT AAGCCCTCTA CATGAACTGT
  TCACTCCACC AGAAGAGCTC TCCCTACAAA ACCCCAAATA ATAGTTGGCT GCCTGAATTC
  TTCAAGTTTC CACTCCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388617	CHEV_7_116076911	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215134316					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	869 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	463 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	1018 bp upstream
Rr400539	regulatory region 400539	760 bp upstream
Rr652951	regulatory region 652951	694 bp distal
Rr652952	regulatory region 652952	530 bp proximal
Rr652953	regulatory region 652953	750 bp proximal
Tssr68456	transcription start site region 68456	1008 bp upstream
Tssr68457	transcription start site region 68457	1120 bp upstream