rs215142781 SNP Detail

Summary

• ID
  rs215142781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164908070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCACCG CACTTGTCAC
  CATGTGACTC CCCTCCTGTC ACACTGTTCC TACTTAGCTG GGTCCCACTT TCCCATCCTT
  CAATGCCTTC TGATGCCCCC CTTCATGGGG AAGTCTTCCC AGAAGACCCT GAAAGCAGAG
  CTTCTTAACG GGGACCAGTT TGGCTCTCTG TGGGGGCGTT GGCCACATCT GATCATCTTT
  Y
  GGATGCTGTA CTTGGCGGGG AGGCTGTTTC TGGCATTTGG TTAGTGGAGG CAAAGGTGCT
  GCTAAATAGT CTGTGAAACA AAGGCCATTT CCCAGCACAA AATACCTGCA GATTGGCCAT
  TTCCATTTCA ATATGACCGT AACCTTTCCT TTCTGTGGTT TCTGTTCTTC ACTTAATGAT
  CATCTTGGGA TGCTGCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356446787	MGP_WTSI_2_164891650	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs215142781					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356446787	MGP_WTSI_2_164891650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164908070 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21708	transcription start site region 21708	1987 bp downstream
Tssr21709	transcription start site region 21709	1945 bp downstream
Tssr21710	transcription start site region 21710	1211 bp downstream
Tssr21711	transcription start site region 21711	1148 bp downstream
Tssr21712	transcription start site region 21712	1125 bp downstream
Tssr21713	transcription start site region 21713	431 bp downstream
Tssr21714	transcription start site region 21714	509 bp upstream
Tssr21715	transcription start site region 21715	555 bp upstream
Tssr21716	transcription start site region 21716	609 bp upstream
Tssr21717	transcription start site region 21717	696 bp upstream
Tssr21718	transcription start site region 21718	742 bp upstream
Tssr21719	transcription start site region 21719	833 bp upstream
Tssr21720	transcription start site region 21720	1036 bp upstream
Tssr21721	transcription start site region 21721	1079 bp upstream
Tssr21722	transcription start site region 21722	1949 bp upstream
Tssr27603	transcription start site region 27603	766 bp upstream