rs215146546 SNP Detail

Summary

• ID
  rs215146546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91761311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGACAGA GCATGGAGTA
  GCCTGGCCCA CAACCCCACC ATATTCGCTG ACCTTTGGTC TTTGACTTGG TCTTGGAGGT
  GCAGGGCTTA GTCACGCGGA TGGTCTCCTG GCACTGGGCA TTGTACCGCG CCTTCTTCAG
  GGTCCCTTGG CGGGCTTTGG TGCCAGTGCT CCCATCACAC GCCCCCCAGC TCTCAAACTT
  R
  TATTTGCAGT CGGCTGATGG GAGAGTGGCC CCACGGTGAG AGACAGGAGG GTTGTGGATG
  TCCTCCCTGC CTCCGGTTTA TAAGGACATA CCCTCTGGCT TCCCGCCCTC CTCCCGCGCG
  CCACCTCACC TCCAAATTCC TTCTTCCAGT TGCAGGGCAC CTTGCAATGG ACGCGCTGGG
  TCTGGGCCCC ACAGGTACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354821169	MGP_WTSI_2_91771123	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215146546					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354821169	MGP_WTSI_2_91771123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91761311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11916	CpG island 11916	88 bp proximal
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	903 bp proximal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	998 bp proximal
Dgkz	diacylglycerol kinase zeta	1858 bp downstream
Gm39876	predicted gene, 39876	584 bp upstream
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	within coordinates
Rr560808	regulatory region 560808	1562 bp distal
Rr560809	regulatory region 560809	739 bp distal
Rr560810	regulatory region 560810	712 bp proximal
Rr560811	regulatory region 560811	1321 bp proximal
Tssr18929	transcription start site region 18929	1290 bp downstream
Tssr25211	transcription start site region 25211	1076 bp upstream
Tssr25212	transcription start site region 25212	1062 bp upstream
Tssr25213	transcription start site region 25213	28 bp upstream
Tssr25214	transcription start site region 25214	485 bp downstream
Tssr25215	transcription start site region 25215	695 bp downstream
Tssr25216	transcription start site region 25216	709 bp downstream
Tssr25217	transcription start site region 25217	730 bp downstream
Tssr25218	transcription start site region 25218	762 bp downstream
Tssr25219	transcription start site region 25219	808 bp downstream
Tssr25220	transcription start site region 25220	989 bp downstream
Tssr25221	transcription start site region 25221	1028 bp downstream