rs215159116 SNP Detail

Summary

• ID
  rs215159116
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19747710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTCAG GCGTGTACCA
  GATGTCTGTT TCAGAAGCAG CTGTCCCTGG GGGAGGAAGT AGGAAGGGTG AAGGCTGAAG
  ACCCAGACAT TGGAGAAAAT GGCTTAGTCA CATACAATAT CATTGATGGA GCCGGCATAG
  AACTGTTTGA AATCAAAACA GACTATGAAA CACTATGTTG CTGCTGCTGC TGCTGCTGCC
  G
  CCGCCTAGAG CTCCTCATTT AGCCCCCTGA GACAAGCCTG TGGTTAGTTG TTGTTAGCCT
  TGCTACACAG ACAGGAAACC ATAGCTAGGA ATTAGACACT GCCTGAGTTT TGAGAGCTTG
  CTGTTAGCAC AATACCAATT CCGAAACAGG CCTTCCTCAC TCTCAGGGAA GCTTCTTACC
  CGCCAGGCTT TCCTGCCCTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	QSi3/Ianm
ss373910033	MGP_WTSI_8_19697694	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	QSi3/Ianm
rs215159116					SNP	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373910033	MGP_WTSI_8_19697694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19747710 () rs orientation: forward

Symbol	Name	Function Class
Gm6483	predicted gene 6483	within coordinates
Gm64856	predicted gene, 64856	within coordinates
Rr175760	regulatory region 175760	1091 bp proximal
Rr183693	regulatory region 183693	within coordinates
Rr183694	regulatory region 183694	1661 bp proximal
Rr188939	regulatory region 188939	392 bp proximal
Rr381772	regulatory region 381772	within coordinates
Tssr164697	transcription start site region 164697	1590 bp downstream
Tssr164698	transcription start site region 164698	1551 bp downstream
Tssr164699	transcription start site region 164699	1487 bp downstream