rs215160774 SNP Detail

Summary

• ID
  rs215160774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75063212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAAGCCC CGGAAGGGGA
  GAGTGAATAA ACACAGAACG GGGCCTCACC CTCCCTGCAC TATTCTCCCC CAGCCCGTCG
  CCTGCAGTTC CGGAAAGTTA ACCCCTTGGA GGCCAAGCCT GGGGTTACGT ACTCCCCTAC
  CCAACCCTGC TTCCGCGTGC GCACCCTCCT CCCGCTCCAA CTCCCTGTCG CTTCGTCCCG
  Y
  CCTCCCCTAC GCCCCCCCTC CCCGCTTGCC ACTATAAATA GCCTCTTTTC CCGTTTCCTA
  AATTCTCTGC TGACGTCGGC AGCGCGTCAG TGTGTAGGAG CCGCGGCCGC ATGAATGAGC
  CGCCGCACGA GTACTACGCG CGCCTATAAA AGCGGCGGCG CCGGCCGGGC TGCGGGAGGC
  AAGCCGGCAC TGGTGCGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323750380	CHEV_11_74985888	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215160774					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75063212 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	within coordinates
Cpgi3252	CpG island 3252	1463 bp distal
Cpgi3253	CpG island 3253	884 bp distal
Cpgi3254	CpG island 3254	within coordinates
Mir132	microRNA 132	1296 bp upstream
Mir212	microRNA 212	1002 bp upstream
Mirc19	microRNA cluster 19, including Mir212 through Mir132	1002 bp proximal
Rr402719	regulatory region 402719	612 bp upstream
Rr451077	regulatory region 451077	1715 bp distal
Rr451078	regulatory region 451078	within coordinates
Rr451079	regulatory region 451079	827 bp proximal
Rr451080	regulatory region 451080	1328 bp proximal
Tssr102928	transcription start site region 102928	58 bp upstream
Tssr102929	transcription start site region 102929	85 bp upstream
Tssr102930	transcription start site region 102930	167 bp upstream