rs215165060 SNP Detail

Summary

• ID
  rs215165060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46346828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAGACAT TTTTCTTCTT
  TGGGGGATAT TTTGTAATTT CTCCCCTGTG ACAGAGAAAT CCAAAAAGTA TACATATTTC
  CTCTTCTCTC TCAACCTGCT TTCCTCTTAG CTCTCCTTAA TGCTGCCATA ATTGCTGAGT
  AACTGTATTC AGTTCTCCCA GATCATCGCT GCCTCTTGGT AGAGTGTTAT TGTCTGGCAA
  Y
  TGATAGCCTC TCGGAACGGC AGCACGAGTG TGTGCCTCAT GTTCAGTCAG AGCCTTGCTG
  GAAACAAACA CTGTGGCAGA GCTTCGGGAG TGCAGTCCGC CAGCTTGATC TTCTCCAGTT
  GTCTAGGATC TTGTACTCAC TCTTTGCTTG CAGAGAGGAA ACGCCTCGTA GATGTCCAAA
  ACAAACAAAC CAGACAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325609394	CHEV_18_46373415	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215165060					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46346828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	963 bp distal
Rr352866	regulatory region 352866	27 bp distal
Trim36	tripartite motif-containing 36	1154 bp upstream
Tssr153216	transcription start site region 153216	1300 bp upstream
Tssr153217	transcription start site region 153217	1171 bp upstream
Tssr153218	transcription start site region 153218	1127 bp upstream
Tssr153219	transcription start site region 153219	940 bp upstream