rs215171220 SNP Detail

Summary

• ID
  rs215171220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115833652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGAAGC TACCCTGTAT
  CACATCCCTA GGATTAAACC AAAAACAAAT TCTTATAATA TTTCTGTGTT TTTTAAAGAA
  ACGAGAATTC CAAAATTGTC ACTACAAAGA GTCATCTTCC CTCCCTTGGT TACTGCAATA
  CTCTTCTGCC AAGAGTAGCT AAGCTATGGA ATCGTCTCCA GTGTCCAACA GCAGATGAAT
  R
  AGTAAAGAAA ATGTGTTATT ATTCATGCTG GGCTACTATT CAGTCACAAA AAGAGTAAAA
  TCTATAACAT GCAGCAGCAT GGATGGACCT GGAGAGCACT GTGTTGGGTA AATACATCAG
  ACACAGAATG ACAGATGTCA CTTGCTCTCA CTTGCATGTA TGTGTGCTAA AATTTAACTT
  TCTATAGAAT AGGACAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320894108	CHEV_3_115742921	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215171220					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115833652 () rs orientation: forward

Symbol	Name	Function Class
Rr583646	regulatory region 583646	961 bp proximal