rs215172786 SNP Detail

Summary

• ID
  rs215172786
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76368339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGCTCCG GCGCGCTGCT GGGGGGTCCG
  GCCGCGTCTC GCCTCCTCCC TCCGCCTCTC CCGTTTCCTC CTTCctgctg ctgctgccgc
  cgctgctgct TTTAAAGCAG ATTCTTTGGC CACAAATAGC AACTCGGCTG CCCCCCTCAG
  S
  GCCTCCCTCC GGTTCTTGTC TTCTTCCCCC CAAAAGTGAA GCGCGAGCGA GATAACCCGA
  TACTGAGGCC CGCTGGGGTG AGGGGAGCGA GCGAAGGGTG CTCGCAGCTC GGGAGTGGGG
  TCCTGATTGC ACCGGCCAGG GCCAGGACAG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170950	CHEV_4_76096006	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215172786					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76368339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42303	predicted gene, 42303			790 bp upstream
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr594103	regulatory region 594103			133 bp distal
Rr594104	regulatory region 594104			within coordinates
Rr594105	regulatory region 594105			within coordinates
Rr594106	regulatory region 594106			796 bp proximal
Tssr37647	transcription start site region 37647			782 bp upstream
Tssr37648	transcription start site region 37648			1351 bp upstream
Tssr42162	transcription start site region 42162			317 bp upstream
Tssr42163	transcription start site region 42163			376 bp downstream
Tssr42164	transcription start site region 42164			488 bp downstream