rs215172786 SNP Detail

Summary

• ID
  rs215172786
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76368339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGCTCCG GCGCGCTGCT GGGGGGTCCG
  GCCGCGTCTC GCCTCCTCCC TCCGCCTCTC CCGTTTCCTC CTTCctgctg ctgctgccgc
  cgctgctgct TTTAAAGCAG ATTCTTTGGC CACAAATAGC AACTCGGCTG CCCCCCTCAG
  S
  GCCTCCCTCC GGTTCTTGTC TTCTTCCCCC CAAAAGTGAA GCGCGAGCGA GATAACCCGA
  TACTGAGGCC CGCTGGGGTG AGGGGAGCGA GCGAAGGGTG CTCGCAGCTC GGGAGTGGGG
  TCCTGATTGC ACCGGCCAGG GCCAGGACAG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170950	CHEV_4_76096006	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215172786					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76368339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	within coordinates
Gm42303	predicted gene, 42303	790 bp upstream
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr101140	regulatory region 101140	within coordinates
Rr101141	regulatory region 101141	1661 bp proximal
Tssr37647	transcription start site region 37647	782 bp upstream
Tssr37648	transcription start site region 37648	1351 bp upstream
Tssr42162	transcription start site region 42162	317 bp upstream
Tssr42163	transcription start site region 42163	376 bp downstream
Tssr42164	transcription start site region 42164	488 bp downstream