rs215182629 SNP Detail

Summary

• ID
  rs215182629
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190919411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGCTG AGGGGCTCCT
  GAAATGGAGA CTCTCTCCCC CAAGCTACCT CCTGCTCTGT AGATTTCTGA GAGCCAAAAG
  AGGCAACTGT GGTGAAAACT GTTGCATGGC CCAATGACTA ACTCATTTTT CTGGAAACTA
  CAGCTGAGAA GCTCTGTCAG ATCAGATTCT AGGGCACAGC CTATCCTCTA TCCGCCCCTC
  C
  CATACACACT TCCAAACTTT AACTCATGTA GGTACCCAGT CACAGAGGCA CTTACCCAAG
  GCAGGGATTG GATCTTTTGA GGACATCTTG TATGCAGACA TTGACTTTAG GCCACAGGGC
  CAAATCTAGG TAGCAGCTGT CTCCACTTCA GAGAGGAGAT CCACGGGTCC CAGAAATCTG
  AGATGAGGTC AGGGAAGCCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss352827906	MGP_WTSI_1_193011093	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs215182629					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352827906	MGP_WTSI_1_193011093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190919411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1219	CpG island 1219	1460 bp distal
Rr372645	regulatory region 372645	1657 bp upstream
Rr426070	regulatory region 426070	282 bp distal
Rr426071	regulatory region 426071	552 bp distal
Rr426072	regulatory region 426072	511 bp distal
Tssr10737	transcription start site region 10737	1292 bp downstream
Tssr10738	transcription start site region 10738	513 bp downstream
Tssr15765	transcription start site region 15765	722 bp upstream