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rs215185475 SNP Detail
Summary
  • ID
    rs215185475
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr13:98827416 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCTCTGTGA AGTTGAGGTC
    AACCTGGTCT ACAAAGTGAG TTCTGGGCCA CCCAGAGCTG CAGAGTGAGA CTGTGTCACA
    AACAAACAAG CAAGCAAGCA AAAGCAATAA ATGAATGAAT AAATCTTATT TTTAAAAAAG
    ATCATAGTAA GTCTAGGAAC TGGAACTGAA TATTCCCTTT AACTCTATAC TGCAGTGCAA
    W
    GGGCTGTAAA GTAAGCCCAC TGGGCATCTG ATAACGTGCT TTCACCGAAA ACAGGCCTCC
    TGATGCACGC TCACAGGTCC AAGAACATGT CTCCTTGTAT CTCCCAAGGC ACCTTCTAAG
    AGCACTTCCG TGGCTAGTGA AACAGAATCC CATCGGTGAA TGCTGGGGAG GGCTCTCCGC
    ACGAGCTAGG CTGCGTGCGG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss389656761 MGP_WTSI_13_99460863 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215185475 SNP T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss389656761 MGP_WTSI_13_99460863 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98827416 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 1396 bp upstream
Tssr123632 transcription start site region 123632 1243 bp downstream
Tssr123633 transcription start site region 123633 1287 bp downstream
Tssr123634 transcription start site region 123634 1807 bp downstream
Tssr123635 transcription start site region 123635 1817 bp downstream
Tssr123636 transcription start site region 123636 1851 bp downstream
Tssr123637 transcription start site region 123637 1881 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory