rs215186192 SNP Detail

Summary

• ID
  rs215186192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57720493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCGCAGA GACTGGGCGA
  AACGCGCGCG GGCACCGGGA GACCCGCCGT AGCCGCTGCG TCCTTTCCTC TCCTCTCCAC
  GTAGCCAGGT GGGCCAGCCT CGGCCGGGTT CTCCGGCGGC GTTGGCCTGG TCTCACTGGT
  TTAGCTCCAG CGCCCAGACT TGCTGAGGCC AGCCGGTGCG CCCTTTAATC CTCTTCTCGC
  Y
  GGGCCCCGAG GCAGGAGGGA AGCTTTCGGG CTGCTGAGGC TGTCAATGGA CACAAACAAA
  CAAACAGAAG GCGAGAAAGT CAGGTTTAAG TTATTCAGTT CGGTCCCGCC GGCTTGGAGG
  GGAGTTTGGG GAACGGGTTG GGAGCAGTAA CTGGGCGTCC TTAACTAAGT GACAGATGTC
  TGTTTGTTGA ACCACACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383506450	MGP_WTSI_11_57643169	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215186192					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383506450	MGP_WTSI_11_57643169	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57720493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	1307 bp distal
Cpgi2911	CpG island 2911	within coordinates
Cpgi2912	CpG island 2912	1568 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447811	regulatory region 447811	1910 bp distal
Rr447812	regulatory region 447812	1150 bp distal
Rr447813	regulatory region 447813	183 bp distal
Rr447814	regulatory region 447814	within coordinates
Tssr3506	transcription start site region 3506	396 bp upstream
Tssr108123	transcription start site region 108123	704 bp upstream
Tssr108124	transcription start site region 108124	647 bp upstream
Tssr108125	transcription start site region 108125	602 bp upstream
Tssr108126	transcription start site region 108126	421 bp upstream
Tssr108127	transcription start site region 108127	354 bp upstream
Tssr108128	transcription start site region 108128	342 bp upstream
Tssr108129	transcription start site region 108129	207 bp upstream