rs215187536 SNP Detail

Summary

• ID
  rs215187536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135146866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGGTGG AGTATTTACA
  GCTAACTTGA AAAAAATGTT GTGCAGAATA AACTCAGTCT TAATAGAAAA GACAAAATGG
  GAAGGTTCGG TATTAGAAAC TTTGGCTTAG TAACACAGTT TTTAAAGAGT TCTGTGGAAA
  GGAAGGCAAG GACTTAAAAT GACTGGTAGG ATCTAATACT ACTTTATTTG TAGTTATTTA
  R
  TATGTATAAC TTGATCAGTT TGATTGGAAA AGCTGTTCAT GAAGTTAAGT CTAACCTGTA
  TATATTGATG TTGAAATCTT AAATTCTGTC TCTGGGTAAT CTTTGTAGTT TTATGCAAAA
  CACTTAACTG TTTGTATTCT TGATGATAAT GCAAAGAGAA AGAAAACCTT AGTATTCAAG
  ACTTCAAATA GATAATAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359834817	MGP_WTSI_3_135104069	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215187536					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359834817	MGP_WTSI_3_135104069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135146866 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13855	CpG island 13855			1453 bp distal
Rr398041	regulatory region 398041			629 bp downstream
Rr585711	regulatory region 585711			1884 bp distal
Rr585712	regulatory region 585712			1739 bp distal
Rr585713	regulatory region 585713			1238 bp distal
Rr585714	regulatory region 585714			134 bp distal
Tssr1058	transcription start site region 1058			829 bp upstream
Tssr31821	transcription start site region 31821			1931 bp downstream
Tssr31822	transcription start site region 31822			1665 bp downstream
Tssr31823	transcription start site region 31823			1636 bp downstream
Tssr31824	transcription start site region 31824			1605 bp downstream
Tssr35785	transcription start site region 35785			729 bp upstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant