rs215202371 SNP Detail

Summary

• ID
  rs215202371
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114339691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAGGAG GAACACTGAA
  CATGACTTCA ATTTAGCATT GAAAATCGGC TTTCCCCAGC CACAATTAAA ATCAGGTTTC
  TGAGAAGGTT GTCAAGATTC ATTTGTTCAA TTAGTGTCAT TAAGAATGTA AAGCTAGTTC
  TATTGAGTGT TTAAAGGCAG TTTAAGATTG GGGGGGGGGG GGAGCGGGGG GGGGGCGGGG
  T
  GAGGCCTCCT GGGTTGTCCT GTTCTACAAA ATTTTTAAAA ATCAGTTTAA CGCTTAAGTG
  ACATAATAAA GGCTAAAGGG ATATATAAAC TGGGGAAGGA CCCACTATTA AATTTTAAAA
  GGAGCTTGTA ACCCTCTTTC ACATCCCGAG AAACATGGAG ATCAGCAGTT GAAGCTACCT
  TCGGGATTCC TTGATTGTGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	QSi5/Ianm	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss379004408	MGP_WTSI_9_114419741	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	QSi5/Ianm	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs215202371					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379004408	MGP_WTSI_9_114419741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114339691 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	91 bp distal
Rr207539	regulatory region 207539	891 bp distal
Rr207540	regulatory region 207540	510 bp proximal
Rr368881	regulatory region 368881	462 bp downstream
Trim71	tripartite motif-containing 71	645 bp downstream
Tssr91842	transcription start site region 91842	1816 bp downstream