rs215207466 SNP Detail

Summary

• ID
  rs215207466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148492227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGTGC AAAACTGTGA
  ATATTCTAGA AACTACTGAT TGTGCACTTT AGAAGTTCTT TTTCAAGCTT TAAAGCAAGC
  GCGCGCGCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGATG TGCGTGTGGC
  TACCTGCAGA GGCCATTTAT GGGCATCAGG GTCTCAGGAA ATGGATTTAT AGGCAGTTGT
  R
  TGCCACCGTA TGTAGGTGCT GGGAACTAAG TCTAGGCTCT TGGCAAGAGC AGCCAGTGTT
  CTAACCACTG AGACATTTCT CTAGTCCTAG AAGGGCTTTT TGGCAGTGGT GTTTTGTTAT
  GTTTTGTTTT TTGTTTTGTT TTTTTGTTTT CTTGTTTGTT TTTGTTTGTG AGACCGTGTT
  TCTCTGTGTA ACCCTGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321718374	CHEV_5_149366993	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215207466					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148492227 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	1556 bp upstream
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	1492 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	971 bp upstream
Rr625197	regulatory region 625197	1566 bp distal
Rr625198	regulatory region 625198	1262 bp distal
Rr625199	regulatory region 625199	19 bp distal
Rr625200	regulatory region 625200	1117 bp proximal
Tssr54578	transcription start site region 54578	1536 bp upstream
Tssr54579	transcription start site region 54579	1392 bp upstream