rs215207940 SNP Detail

Summary

• ID
  rs215207940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104497777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGGGTACA CCTCTGGAGA GGACAAGGCT
  GGAGGAGGAG GAACATCAGA CAAGATGGCG TGGAAGACAT GGCATTTGAG ATGTTTTGAA
  AAGTAAGTGG GATTTTCCAA ATGGAAAGAG GAAGGAAGGT CAGTCAGATG GAAAGGCATG
  R
  GACATTTAGG AGTGACAAAA ATCTCTTGGG CTAAGGCTGG GTGATGGATC ATGGCTGAGT
  TCTTTCCACA CCCTTCCTCc agagtctgct ctagctcagg ctggctttga actccctatg
  tactcaagca ctacctggaa cttctggtct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323836958	CHEV_11_104468265	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215207940					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104497777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	835 bp proximal
Itgb3	integrin beta 3	1049 bp upstream
Rr403025	regulatory region 403025	928 bp upstream
Rr457855	regulatory region 457855	559 bp proximal
Tssr105409	transcription start site region 105409	825 bp upstream
Tssr105410	transcription start site region 105410	1049 bp upstream
Tssr105411	transcription start site region 105411	1075 bp upstream
Tssr105412	transcription start site region 105412	1089 bp upstream