rs215209990 SNP Detail

Summary

• ID
  rs215209990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141390607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGCAGG CTAGTCAATC
  TTCCCCACTC CTCTATTTTT CGGTTTCACT ATGTAGTCCA GGCTAGCTTG GACCTCAGGA
  CTCTGCTTTA GCCTCCTGTG TGCTGGATGA CAGAGATGCA TCACCACACC CAGCCTTCTG
  AGGCTGGCCT GTCTCCTCAC CCCTGTGCGT GCCCTTGACA GGTAGTCATT CCTACCAGGA
  R
  TTGGGGCAAT GACCAATACT AACAAGCCCC AACCCAAAGT GTCATAGTGT CACCGTCCCA
  CGGCTTACCT TCCAAAACTA CAACCCTAGA CACCTCAGGT CCTCACTCAG AGCTCTGTAA
  CTCGCTTTTT TCTAAACTGC CATCCTGGAG TTAGGACGAC TTGGGGATTC CGTGGGTCCC
  CAAGCAATGT CGCAGGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388834	CHEV_4_141219211	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215209990					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141390607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	within coordinates
Gm54266	predicted gene, 54266	799 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603850	regulatory region 603850	309 bp proximal
Rr603851	regulatory region 603851	812 bp proximal
Rr603852	regulatory region 603852	912 bp proximal
Rr603853	regulatory region 603853	1593 bp proximal
Tssr40091	transcription start site region 40091	891 bp upstream
Tssr40092	transcription start site region 40092	945 bp upstream
Tssr44355	transcription start site region 44355	703 bp downstream
Tssr44356	transcription start site region 44356	767 bp downstream