rs215212871 SNP Detail

Summary

• ID
  rs215212871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCATCA ACATTCACCC
  TGAAAACTCC TCTCCACTCT CCAAAGTTCA TATACAGCCC TTGTCCACCC AAATAAAGTA
  AGTGAGCACC AGCTATTTCA CTGAAGACCA TCTAAGAGCC ACTTCATTGG GAGTCATCTA
  AAAGAGCTGT AAGACTAAAA TCGCCAGAGA AGGCCTTCCT TGGTGAAGCC CTCCACCCCA
  Y
  GCCCACATGT GAGTTCAGCT GGACTGAGAG CCAGTCCCAA CCTGTTCCAG ACTCCACTTC
  ATCCTTCAAG CCTGGTGCCT GGACACCCTG AGGGAGGAAA CAGAGGACAG AGAAGCACTT
  CTGGCACCCA ACGCGGCCCA CAGCTGGAGG AAGCTAACAT ACACCTGGGA GGATGCTGGT
  ACTTGATGGG CTGGGCTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923456	CHEV_15_36655774	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215212871					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726263 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	223 bp upstream
Cpgi7034	CpG island 7034	1317 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	783 bp downstream
Tssr131078	transcription start site region 131078	742 bp downstream
Tssr131079	transcription start site region 131079	301 bp upstream
Tssr131080	transcription start site region 131080	342 bp upstream
Tssr131081	transcription start site region 131081	373 bp upstream
Tssr131082	transcription start site region 131082	648 bp upstream
Tssr131083	transcription start site region 131083	841 bp upstream
Tssr131084	transcription start site region 131084	887 bp upstream