rs215225930 SNP Detail

Summary

• ID
  rs215225930
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:72891901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCCTGTA ATCCTAACAC
  TTGGGAAATA AAGGCAAGGG GTTCTGGAAT TCAGTGCCAG CTACACAAAG AATTTAAAGT
  CAGCCCGAGT TACTCTGAGA AGCTCTGTCT CAAAAAAAAC CCACCACCCA GAACTCCCCT
  CTCACCCAAA CAAAAACGAG GGGTTAGGGA TCTACCTCCT TTGTAGAGGG CTTTCTTAGC
  K
  TGTGTGAGGC TTGAGGTTCA ATCCCTAGTT ACAGCAACAC AAATATCAGA TCTAAATGTG
  AACTAGCTTT TGCCCAACAT CAGCTTGTTG AATGGTTTCC TTTACTGTTT ACTCACTAGA
  CAGGTAGGGG ACAGAGGAAC GGTAACTTCC CTCTGGGGTG AGTGCACTCC TATTCACCCT
  CTTCCATCCT TTTAGACTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378029972	MGP_WTSI_9_72832426	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215225930					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378029972	MGP_WTSI_9_72832426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72891901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccpg1	cell cycle progression 1			810 bp upstream
Cpgi22024	CpG island 22024			455 bp proximal
Gm44503	predicted readthrough transcript (NMD candidate), 44503			Intron
Pierce2	piercer of microtubule wall 2			Intron
				Noncoding-Transcript-Variant
Rr401512	regulatory region 401512			702 bp upstream
Rr682883	regulatory region 682883			1389 bp distal
Rr682884	regulatory region 682884			89 bp proximal
Rr682885	regulatory region 682885			740 bp proximal
Rr682886	regulatory region 682886			997 bp proximal
Rr682887	regulatory region 682887			1161 bp proximal
Tssr2935	transcription start site region 2935			679 bp downstream
Tssr86066	transcription start site region 86066			772 bp upstream
Tssr86067	transcription start site region 86067			791 bp upstream
Tssr86068	transcription start site region 86068			908 bp upstream
Tssr86069	transcription start site region 86069			949 bp upstream
Tssr90501	transcription start site region 90501			664 bp downstream
Tssr90502	transcription start site region 90502			718 bp downstream
Tssr90503	transcription start site region 90503			725 bp downstream