rs215229572 SNP Detail

Summary

• ID
  rs215229572
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156078847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCTAGT CAGTCTGCTT
  GGCAAGTTCC TGGCCAACCA AGGCTTCATT GTGAGACCCT GTCTCAAAAC AAAACAAAAA
  AGCAAAAGAA ACAAAATATA TAGTTTGATT TCATCAGAAT TATAATGTAA GGATGGCAAA
  GAAGTACAGA TATTCCCCCA GCCACCCTGT GTATTCCTGA AACCTAGGTG GAACTAAGTC
  T
  TGAGTAGACT GTTATAGGTA CAGCAAATTT TAATTTAGAA ATTAGGCCCA GGTAGAGATT
  AACAAATGAT CATAAAACAG TTGTGACTTT GACAAATAGA ATGCCATCTG ACTTCGATTG
  ATGGCAAATC AAGGGGTATC ATTGTCACCT CCACTACAGG TGTCACTAGC ATTCCTTTTT
  ACTACTGGTT GGAAACTGAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444400	CHEV_4_155368499	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215229572					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156078847 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	1741 bp upstream
Cpgi15496	CpG island 15496	553 bp distal
Rr100725	regulatory region 100725	within coordinates
Rr377473	regulatory region 377473	17 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	1444 bp downstream
Tssr40748	transcription start site region 40748	1977 bp downstream
Tssr40749	transcription start site region 40749	1203 bp downstream
Tssr40750	transcription start site region 40750	1094 bp downstream
Tssr40751	transcription start site region 40751	1074 bp downstream
Tssr40752	transcription start site region 40752	935 bp downstream
Tssr40753	transcription start site region 40753	1949 bp upstream
Tssr44988	transcription start site region 44988	1716 bp upstream