rs215230065 SNP Detail

Summary

• ID
  rs215230065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86588681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCGAGG CCTTCTGCTG
  TCTGACTTAG GTCAGGGGTC CTGAAAGCTG CATTGCAAAG ATGCAGGGCG TCTTGGGGTT
  TTGGAAAATG CAGACAAATT AACCAGAGTC TTCAGAAAAG ACCACTTCAA AACTGGAAGT
  TCGGGTTCTA ACCTTTTACT TTAAGTCAAG AAAGTTACAA AGATGTGTGG AATTCCAACA
  Y
  GTTAATGACC TGTAGGGACT TCTGGTTTAC TGCTCTATGG ATGTAAACAA TTCATCCATG
  GGATGTGGCG GCTCTGGTCT GTAATCCCCA GCCAGCACTA GGGAAATTGC GGCAGGAGGA
  TTGTTGTGAG TTCTAGGCCA GAAAAAATAC CGTTCTCAAA GAGAGACAAC TTATCAAAAG
  CTTCTAATTA AAAGGTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362287727	MGP_WTSI_4_86316348	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215230065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362287727	MGP_WTSI_4_86316348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86588681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	270 bp distal
Plin2	perilipin 2	384 bp upstream
Rr376780	regulatory region 376780	928 bp upstream
Rr594783	regulatory region 594783	1524 bp distal
Rr594784	regulatory region 594784	395 bp distal
Rr594785	regulatory region 594785	within coordinates
Rr594786	regulatory region 594786	521 bp proximal
Rr594787	regulatory region 594787	1377 bp proximal
Tssr1221	transcription start site region 1221	191 bp downstream
Tssr37738	transcription start site region 37738	240 bp downstream
Tssr42335	transcription start site region 42335	1884 bp upstream
Tssr42336	transcription start site region 42336	1701 bp upstream
Tssr42337	transcription start site region 42337	983 bp upstream
Tssr42338	transcription start site region 42338	959 bp upstream
Tssr42339	transcription start site region 42339	937 bp upstream
Tssr42340	transcription start site region 42340	419 bp upstream
Tssr42341	transcription start site region 42341	401 bp upstream
Tssr42342	transcription start site region 42342	1955 bp downstream