rs215230316 SNP Detail

Summary

• ID
  rs215230316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118733170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC GGACAAAGGC GGCGCCCGAG
  Y
  GGGCGCAGGT AGTGGTATCG GGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320472569	CHEV_2_118728425	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215230316					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118733170 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	within coordinates
Gm32957	predicted gene, 32957	1509 bp upstream
Gm75754	predicted gene, 75754	1890 bp upstream
Rr397220	regulatory region 397220	1185 bp downstream
Rr563367	regulatory region 563367	1226 bp distal
Rr563368	regulatory region 563368	1644 bp distal
Rr563369	regulatory region 563369	1376 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	1046 bp distal
Rr563372	regulatory region 563372	588 bp distal
Rr563373	regulatory region 563373	136 bp distal
Rr563374	regulatory region 563374	336 bp proximal
Tssr19588	transcription start site region 19588	1286 bp downstream
Tssr19589	transcription start site region 19589	1201 bp downstream
Tssr19590	transcription start site region 19590	1072 bp downstream
Tssr19591	transcription start site region 19591	1026 bp downstream