rs215234872 SNP Detail

Summary

• ID
  rs215234872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130267709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAACAAA ATGGTAAAGA
  ATGTTTTATT GATGTACCCG AAGATCACAA AGACATTGCG TTGGCGTCTT ATTTCAATAG
  AAGACTTTGA GCCGGGCGGT GGTGGCGCAC ACCTTTAATC CCAGCACTTG GGAGGCAGAG
  GCAGGTGGAT TTCTGAGTTC AAGGCCAGCC TGGTCTACAA AGCGAGTTCC AGGACAGCCA
  R
  GGCTATACAG AGAAACCCTG TCTCGAAAAA ACAAACCAAA AAAACCAAAA CAAAACAAAA
  CAAAAAAACC CAGAAGACTT TGCTTCTGCT CATAGCCAAA CTTTTAAATG GAATTGTGTT
  GTTTGCAATG TAATGCATTT TCTAGACAGA GGATGCCTTG TGGTAATTTC TAGAGCTCTG
  TTACATTTGT TTAGTCATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355662292	MGP_WTSI_2_130251525	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	A	G	G	A	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215234872					SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	A	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355662292	MGP_WTSI_2_130251525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130267709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	864 bp distal
Pced1a	PC-esterase domain containing 1A	1017 bp upstream
Tssr20210	transcription start site region 20210	1396 bp downstream
Tssr26294	transcription start site region 26294	1977 bp upstream
Tssr26295	transcription start site region 26295	1496 bp upstream
Tssr26296	transcription start site region 26296	1483 bp upstream
Tssr26297	transcription start site region 26297	1061 bp upstream
Tssr26298	transcription start site region 26298	999 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates