rs215243985 SNP Detail

Summary

• ID
  rs215243985
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44058258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTAGGTCC CGACTGAGGG
  CGGCCTTGAT CGCAGGCACT CGGAGGACCG CGACCCCCGA GCCTCGCCTC ACCGGTCAGT
  GACGCATCGC CCCCGCCCGC ACGTGCAGCC GCCACCCGGC CCCGCCAACT GCTGCCAACA
  GCCGGCCCCG CCCACCTGCC CGGTACTGCG GCTGCGCGGG GACGCAGGCG ACGCAGCCCC
  M
  GCCCGCGACT CGCGAGACGG TGCGCGGGCG GGACAAAATT GGCCCCGGGT GCGCGCACAG
  TGTAGTGATT CTAAGTGCCC AGACGAGGAC CAAGTCTCCT GGGGTGGGTC ACTCGGACAG
  ACGCTGGTTG AGGCATGCTA GTGCACAGGA CCAGCCCCTC AGTGTAGGAG TTGTTCCTGC
  ATCCTTTTGT GGTTCGTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402544311	MGP_WTSI_19_44144309	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215243985					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402544311	MGP_WTSI_19_44144309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44058258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	within coordinates
Erlin1	ER lipid raft associated 1	34 bp upstream
Gm59010	predicted gene, 59010	41 bp upstream
Rr548150	regulatory region 548150	within coordinates
Rr548151	regulatory region 548151	52 bp proximal
Rr548152	regulatory region 548152	658 bp proximal
Tssr159429	transcription start site region 159429	397 bp upstream
Tssr159430	transcription start site region 159430	144 bp upstream
Tssr159431	transcription start site region 159431	111 bp upstream
Tssr159432	transcription start site region 159432	32 bp upstream