rs215255390 SNP Detail

Summary

• ID
  rs215255390
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65754975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAATGC TCATTTAATG
  ACTTACGTTG TCCTATCAGG CTCTATCTTT TAAGTTCTAC CAGCTTCCAA TAGTAGCACT
  GGATAATGAA TATGTCTATG GATGAATCCA TTGACTAGGC TAGAACATTC CTTATACAAT
  CACTTCCCAA AAGTATTCAA CACATGAGTT TTGGCGAGAC ATTACCAAGG ACTACATTAC
  W
  GTCCTTTTAA CAGCTACTCT GCTTTCTACT CTGATTTCTA TTTTCTGTGA TAAAACATTC
  TGGCCAAAAG GAACTTGGGG AGGAAAGGAC TTTTTGGGGG AGAGGACAGG GCAAGAGGCG
  TATGTTTCCC ATCTTGGTCC ATCATTGAAA AATGTCAGGG CCAAGAGCTC AAGGCAGGAA
  CTTGGAAGCA GGAGCCAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809792	CHEV_6_65727985	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215255390					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65754975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	650 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	997 bp upstream
Rr631490	regulatory region 631490	507 bp proximal
Rr631491	regulatory region 631491	1248 bp proximal
Tssr56854	transcription start site region 56854	1003 bp upstream
Tssr61222	transcription start site region 61222	1645 bp downstream
Tssr61223	transcription start site region 61223	1698 bp downstream
Tssr61224	transcription start site region 61224	1706 bp downstream
Tssr61225	transcription start site region 61225	1723 bp downstream
Tssr61226	transcription start site region 61226	1782 bp downstream