rs215263485 SNP Detail

Summary

• ID
  rs215263485
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30747292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACCCCC ACCCCCTTCC
  CTTGGCCCAA CTCCCAGGGA CTCATTGCCA TTTGGCAAAA CCCATAGCAA GATGGCAGTG
  TTTTCCTGGG AGTCAACAGG AGAGGAAGTG GGTAAAAGAC AGAGCTGGAC ACAGCCTATG
  CTGTGTCCAC TGCAGAATGC TGCTCTGATG TTCTGTTGCT CTCCAGCAGT GGGGAGAGGA
  S
  TCCCAGATAC CACCTAAAGG ACAGATTTGG TCTGGGCCCC TTCCTTCACA TCCCACTGCC
  ACTTGCCTGA GTTTAACAGC AGGTTAGCAC TCTGTAAATC AGAGTGGGGG CCTCTGTACG
  CCTCTCTCCC TCTGCCCACA CCAATTCCCC AATTAGTACA ACTCTCTTCT AAGTCCCCGG
  GACCCCAGCT TCTCAGTAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364424476	MGP_WTSI_5_30892321	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215263485					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364424476	MGP_WTSI_5_30892321	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30747292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15680	CpG island 15680	716 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Gm9899	predicted gene 9899	1329 bp upstream
Kcnk3	potassium channel, subfamily K, member 3	within coordinates
Rr124994	regulatory region 124994	within coordinates
Tssr45585	transcription start site region 45585	1897 bp downstream
Tssr45586	transcription start site region 45586	1777 bp downstream
Tssr45587	transcription start site region 45587	1763 bp downstream
Tssr45588	transcription start site region 45588	1728 bp downstream
Tssr45589	transcription start site region 45589	108 bp upstream
Tssr50495	transcription start site region 50495	1469 bp upstream
Tssr50496	transcription start site region 50496	1197 bp upstream
Tssr50497	transcription start site region 50497	1173 bp upstream