rs215263677 SNP Detail

Summary

• ID
  rs215263677
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:16139886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCTCCT CGGCGACCGC
  GGATAAATCA GGGAGGCGAG CGCTGGGAGC CAGAGCGCGC GGGCGCCGGC GGGCTGGCCG
  AGCTCTGTTT CCACAGTCGC CCTTGATGGC GGCGCAGGCG AGGCAGCCGT GGCACGGAGC
  GGCAGCCACG CGCTAGAGAG TCCGCCCGGC CCCGCCCGGC CCGCCCGGCC GCCCGCCCGT
  K
  CCCAGCCCGC TTCTCCCCGC GCGCTCTCCC GCAGACGTCG GCGCCCCGGC TCCGTCCCTC
  AGCCGCCTCG TGCAGCTCCG CCGCCTCCGG GCCGGCAGGG AGGGCACTGA TCTTCGATCG
  CGAAGATGGC TGCTGGCTGC CTGCTGGCCT TGACTCTGAC ACTTTTCCAA TCTGGGCTGA
  TCGGCCCCTC GAGCGAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss364075002	MGP_WTSI_5_15440706	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs215263677					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364075002	MGP_WTSI_5_15440706	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:16139886 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d1	calcium channel, voltage-dependent, alpha2/delta subunit 1	within coordinates
Cpgi15553	CpG island 15553	within coordinates
Gm3510	predicted gene 3510	within coordinates
Rr607525	regulatory region 607525	759 bp distal
Rr607526	regulatory region 607526	within coordinates
Rr607527	regulatory region 607527	34 bp proximal
Tssr1426	transcription start site region 1426	209 bp downstream
Tssr1427	transcription start site region 1427	3 bp upstream
Tssr45209	transcription start site region 45209	491 bp downstream
Tssr45210	transcription start site region 45210	264 bp downstream
Tssr45211	transcription start site region 45211	192 bp downstream
Tssr45212	transcription start site region 45212	169 bp downstream
Tssr45213	transcription start site region 45213	142 bp downstream
Tssr45214	transcription start site region 45214	101 bp downstream
Tssr45215	transcription start site region 45215	25 bp upstream
Tssr45216	transcription start site region 45216	65 bp upstream