rs215297264 SNP Detail

Summary

• ID
  rs215297264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112687117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCTGGC AGGGGCCTCA
  GTCAGAACCC AGGACACCAT TCCTTCATCT CCCGTCCTTC ACCTTGGAAG GAGCCACAAC
  CCAGGTAAAA GTCTCAAATA GAAAAAAAAA ATAATAACGT TTATAAGCAT CCATTACTAA
  GGAGTGAGCA AGGGGTAGCT AAGCTAAGAC AGCGAAGCCG CTGGGGAAAG GGCTGTTTAC
  R
  GAGCCAAGAG AATGGGAGAG CCCGGCTCGG GAGTTGGGAC TCAGAAACAG GACAGTCTCA
  GTCTACTAGG AAGAAACTGC AAAATCCCCA TACAGCTCCC GGAAGCTGAG ACCGGGGCTA
  ACAACCCTGG CAAGGACAAA TGGGCTAGGA AGACAGGAAC GTACCCAGCC CTCCTCTTTC
  CAGTACCTGA CAAGTCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170485	CHEV_12_113958894	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215297264					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112687117 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	833 bp upstream
Cpgi5179	CpG island 5179	577 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	within coordinates
Rr473584	regulatory region 473584	1010 bp proximal
Rr473585	regulatory region 473585	1344 bp proximal
Rr473586	regulatory region 473586	1522 bp proximal
Tssr115398	transcription start site region 115398	1427 bp downstream
Tssr115399	transcription start site region 115399	422 bp upstream
Tssr115400	transcription start site region 115400	821 bp upstream
Tssr115401	transcription start site region 115401	1146 bp upstream
Tssr115402	transcription start site region 115402	1480 bp upstream
Tssr115403	transcription start site region 115403	1827 bp upstream
Tssr117886	transcription start site region 117886	1009 bp downstream
Tssr117887	transcription start site region 117887	1047 bp downstream
Tssr117888	transcription start site region 117888	1077 bp downstream