rs215302101 SNP Detail

Summary

• ID
  rs215302101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110766139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACGGATT TCTGAGTTCA AGGTCTACAG AGTGAGTTCT
  AGGACAGCCA GGGCTACACA GAGAAACCTT GTCTCAAAAA CAAAACAAAA AAACATACAA
  R
  CAAACAAAGT TGTGCCCCTA AAGCCCAGTC CAGTTCTCAG CAGCAGGCAG GCAGGGTTCC
  CCGGCTTCCT TGACCTTACA GCTTTTGAGC TATGCTCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss378913820	MGP_WTSI_9_110839575	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs215302101					SNP	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378913820	MGP_WTSI_9_110839575	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110766139 () rs orientation: forward

Symbol	Name	Function Class
Rr192786	regulatory region 192786	462 bp proximal
Rr192787	regulatory region 192787	1462 bp proximal
Rr202609	regulatory region 202609	867 bp distal
Rr202610	regulatory region 202610	527 bp proximal
Rr207413	regulatory region 207413	662 bp proximal