rs215310163 SNP Detail

Summary

• ID
  rs215310163
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:5914275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TGCATATGTA
  TATGTATATC TCTTAGGTCC CAGCTACACA GAAAATGAGA GGTTTCTTTT CAAATGTATC
  GATGCCCATG AAGTGAATAC AGACAGCTAT CTGCTGCCTG TTCTCTGACT ACAGCCAGCC
  CTATATTGTC AGCTGTGCCC CCCAAGTGGG TCTTCAGACC ACACTGCACG CTGTGCAATA
  W
  TTCTGTCCTG TTGGGTGAAT ACTCTTGGAT GGCTAGGGCT CTCTCATTGA TGCTCATAGT
  TCTAGAGACT GTCAGAGGAT CTGGTTAAAC CTGTTAGGTT GGTGGGAGGG GGAGTGATGT
  GTGTAAGGCT GGTTTTCTTT GTGTGGCTTA CCAGGATCGT CATTAGAAAT GTCAACACTT
  GTAACTATAA CAACAAAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224093	CHEV_13_5863522	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs215310163					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5914275 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	Intron
Rr387905	regulatory region 387905	1705 bp downstream
Rr403559	regulatory region 403559	264 bp upstream
Tssr118244	transcription start site region 118244	1655 bp downstream
Tssr118245	transcription start site region 118245	1404 bp downstream
Tssr118246	transcription start site region 118246	450 bp downstream
Tssr118247	transcription start site region 118247	380 bp downstream
Tssr118248	transcription start site region 118248	210 bp upstream
Tssr118249	transcription start site region 118249	415 bp upstream
Tssr118250	transcription start site region 118250	474 bp upstream
Tssr118251	transcription start site region 118251	494 bp upstream
Tssr118252	transcription start site region 118252	574 bp upstream
Tssr121319	transcription start site region 121319	29 bp downstream
Tssr121320	transcription start site region 121320	53 bp downstream
Tssr121321	transcription start site region 121321	76 bp downstream
Tssr121322	transcription start site region 121322	97 bp downstream