rs215310294 SNP Detail

Summary

• ID
  rs215310294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14951305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATCCA ATTCCAAAAA
  GCAAAGCGAT TTTTGAGAAT TGTTGGTTAT GTTACATCAA CAGTTCGGTG CCTAGGGTTA
  ATTTGTGGAG CAAGCGGGAA GCTGGAGGGC GCCCTGGCGG CAAAGCCGGG TCGTCTTCCC
  GCAGCCCGGC AGCAGGGGGC CCCCCCGCTT CCCGCTCCCG GCTCCAGGAT CCCCGCTCCC
  R
  GAGCCTCTAG GACGCTCCCC GCCCAAGGTC AAACTCCGCA GCCGCGTGCG TGCGGGCCGC
  GGCCGGGTGG CCGGCTGGCC CGCCAGCTCT GGGAAGCGGA GCCCCGCTGT GCGGGCGGGT
  GACCAGGTCG GTGCTCACAA TGGGGCTGGG GAGTAGGGGC GCCGGCCCGC GAGGCTGCGC
  AGCGCCGGGG CGAGCTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357061075	MGP_WTSI_3_14886245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs215310294					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061075	MGP_WTSI_3_14886245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14951305 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	28 bp upstream
Cpgi12992	CpG island 12992	within coordinates
Rr573722	regulatory region 573722	within coordinates
Rr573723	regulatory region 573723	85 bp distal
Rr573724	regulatory region 573724	194 bp proximal
Rr573725	regulatory region 573725	241 bp proximal
Rr573726	regulatory region 573726	924 bp proximal
Rr573727	regulatory region 573727	977 bp proximal
Rr573728	regulatory region 573728	1159 bp proximal
Tssr826	transcription start site region 826	within coordinates
Tssr827	transcription start site region 827	173 bp upstream
Tssr828	transcription start site region 828	189 bp upstream
Tssr829	transcription start site region 829	279 bp upstream
Tssr830	transcription start site region 830	360 bp upstream
Tssr831	transcription start site region 831	381 bp upstream
Tssr832	transcription start site region 832	470 bp upstream
Tssr28466	transcription start site region 28466	438 bp upstream
Tssr28467	transcription start site region 28467	570 bp upstream
Tssr28468	transcription start site region 28468	1143 bp upstream