rs215315595 SNP Detail

Summary

• ID
  rs215315595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76374340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGAAGTG TGTAGCACTA
  ATACTTTACT TCAGAAGAAC CCACGGCTCG GGCTGGAGAA ACACACCCAG GAGCTGCCCA
  GCCCTAATAC CAACCGCACG GACAAGAACA GCTCGGCGGT TTTCGCCACC CGCCCCCGCC
  CCCCTCCAAG CACGAGGCCC CGCCCACTCA TTTGCATAGG GCGCGCCCCT CAGCGGCCAG
  S
  ACCCAGGCTG CTTCAGAGCT CTGCCAGCCC AAGCGGCTCA GACCCGGCTG GGGGCGGGCC
  CGGGCCGGAG CACGTGTCCA TTCCGGCCTC ACGACGGAGG TGGGCGAGGG CTTAGCCGCG
  GCGCTCCACC CAGAGGCGCC GGGGCGGGGG TCTGCGGGCG TGGCACGCCG CGCGGCCTTC
  CGCGATCCTC CACGAGCCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401278423	MGP_WTSI_18_76400923	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215315595					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401278423	MGP_WTSI_18_76400923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76374340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	within coordinates
Rr540993	regulatory region 540993	443 bp proximal
Smad2	SMAD family member 2	311 bp upstream
Tssr151989	transcription start site region 151989	34 bp upstream
Tssr151990	transcription start site region 151990	63 bp upstream
Tssr151991	transcription start site region 151991	151 bp upstream
Tssr151992	transcription start site region 151992	391 bp upstream
Tssr151993	transcription start site region 151993	623 bp upstream
Tssr151994	transcription start site region 151994	866 bp upstream